[AppDB] - deletion order is broken for versions and applications

[Chris Morgan]

include/version.php, application.php
Chris Morgan <cmorgan at alum.wpi.edu>
When deleting a version or application the first thing deleted was the version 
or application.  Then each of the sub-objects like comments, notes etc were 
deleted.  This order is bad because it makes the database inconsistent, we 
never want a comment/note/etc for a version that doesn't exist.  Delete the 
sub objects first and then the parent object.

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