[Bug 24761] ProteoWizard 2.x 'msconvert' tool fails/hangs sometimes during processing of mass spec data files in RAW format
wine-bugs at winehq.org
wine-bugs at winehq.org
Sun Sep 15 08:47:33 CDT 2013
http://bugs.winehq.org/show_bug.cgi?id=24761
Anastasius Focht <focht at gmx.net> changed:
What |Removed |Added
----------------------------------------------------------------------------
Status|UNCONFIRMED |RESOLVED
URL| |http://proteowizard.sourcef
| |orge.net/downloads.shtml
Keywords| |dotnet, download
CC| |focht at gmx.net
Resolution| |FIXED
Summary|ProteoWizard: Critical |ProteoWizard 2.x
|section 00110060 wait |'msconvert' tool
|failed |fails/hangs sometimes
| |during processing of mass
| |spec data files in RAW
| |format
--- Comment #6 from Anastasius Focht <focht at gmx.net> 2013-09-15 08:47:33 CDT ---
Hello folks,
seems to work for me.
Prerequisites: clean 32-bit WINEPREFIX, 'winetricks -q dotnet40' for newer 3.x
versions (old archived 2.x versions require 'winetricks -q dotnet20')
"MSFile Reader" -> http://sjsupport.thermofinnigan.com/public/detail.asp?id=703
(will automatically install VC++ 2008 and 2010 runtimes)
For testing I used some mass spec data in RAW format from this location:
http://www.chem.wisc.edu/~coon/Downloads/Morpheus/human/data/
--- snip ---
$ wine ./msconvert.exe 111108lockmass01.raw -g
...
format: mzML (Precision_64 [ 1000514:Precision_64 1000515:Precision_32 ],
ByteOrder_LittleEndian, Compression_None) indexed="true"
outputPath: .
extension: .mzML.gz
contactFilename:
filters:
filenames:
111108lockmass01.raw
processing file: 111108lockmass01.raw
...
writing output file: ./111108lockmass01.mzML.gz
--- snip ---
Largest tested was:
input "Velos1.raw" (759 MiB) -> output: "Velos1.mzML.gz" (1.6 GiB)
In 3.x versions there is a GUI tool which works fine too: "MSConvertGUI.exe"
$ du -sh pwiz-bin-windows-x86-vc100-release-3_0_4922.tar.bz2
28M pwiz-bin-windows-x86-vc100-release-3_0_4922.tar.bz2
$ sha1sum pwiz-bin-windows-x86-vc100-release-3_0_4922.tar.bz2
d4264399fd97254872f7a895aea7b7f6bb835651
pwiz-bin-windows-x86-vc100-release-3_0_4922.tar.bz2
$ wine --version
wine-1.7.2-75-gb89afc3
Regards
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