Fix makedep to work on windows again

[Steven Edwards]

Make on mingw does not like mixed line endings. Don't do it, ever.
diffed from a cvs checkout
as MSYS git is slower than molasses flowing uphill on a Minnesota winter day.

Changelog: open makedep in binary mode when writing or appending, move
the EOF marker

-- 
Steven Edwards

"There is one thing stronger than all the armies in the world, and
that is an idea whose time has come." - Victor Hugo
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